rs29335292 SNP Detail

Summary

• ID
  rs29335292
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127345610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC AAGGTTGGCA GCGGGAGCCC
  S
  GGCACCATCT GCTGCTGGAG GAGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38566557	mCV22968934	ABI	CRAMUS_MOUSE	f	SNP	G	G					C
ss61334363	NES16949415	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	C	G	C	G	C	G	C	G	C
ss147732701	ENSMUSSNP4684374	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29335292					SNP	G	G	G	G	C	G	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334363	NES16949415	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127345610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	1415 bp distal
Cpgi2360	CpG island 2360	145 bp distal
Cpgi2361	CpG island 2361	1800 bp proximal
Rr402328	regulatory region 402328	1076 bp downstream
Rr402329	regulatory region 402329	410 bp downstream
Rr440928	regulatory region 440928	592 bp distal
Rr440929	regulatory region 440929	within coordinates
Stac3	SH3 and cysteine rich domain 3	918 bp downstream