rs29335604 SNP Detail

Summary

• ID
  rs29335604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42153871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTTTA CGCGTGATCC
  GTCACTCAAG TGACGTGAGG CCCCCGCCCC TGCACCAAGC TAGTTCGACG CGTACAAACA
  GATGATGTCA TTGTCTCTAC ACGCGCGTGA CCCCGGAGCC CTGCGCCGCA TCGCCATTCG
  CTGCGCGGCT TCCTCGTCAA GCCACGCCGA GCGCTGACTG GCCGCCGCCG CCAGTCTCTG
  R
  GCTCCAGACG CCTCTCGCTC CTCTTCGCCC CCGCCCCCAG CAAATAATAA ACAATCGAGT
  AAAATTGCAA GGACAGAGGG GAGGGAGAGC GAAGGCGCGC TGAGTGGCAG CCTTCGCCGC
  GCAGACAGCG GGAGGACTAG AGGAGGACTG TGCAGGGAGG AGGGAAAGGA GGTAGGGAGC
  GGATCTGAGC CGCACGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38564124	mCV23543109	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147078837	ENSMUSSNP1128002	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29335604					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42153871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	1180 bp upstream
Gm56983	predicted gene, 56983	152 bp upstream
Gm66047	predicted gene, 66047	within coordinates
Rr401852	regulatory region 401852	14 bp downstream
Rr430524	regulatory region 430524	997 bp distal
Rr430525	regulatory region 430525	163 bp distal
Rr430526	regulatory region 430526	within coordinates
Tssr93079	transcription start site region 93079	975 bp downstream
Tssr97434	transcription start site region 97434	1219 bp upstream
Tssr97435	transcription start site region 97435	1194 bp upstream
Tssr97436	transcription start site region 97436	1132 bp upstream
Tssr97437	transcription start site region 97437	1112 bp upstream
Tssr97438	transcription start site region 97438	261 bp upstream
Tssr97439	transcription start site region 97439	235 bp upstream