rs29335615 SNP Detail

Summary

• ID
  rs29335615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13428190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACTTTACA ATTGGAGAAC AGAAATTATC TGCTGTATAT
  TTTACAGCAA CATGCTGTTT TCGGTTTACC TTTAAACACC ACCTCAAAGA GCAGACTTAA
  R
  ATAATGGCCC TAGAATATTT CGAAACTCGT GTGAAAGGTT GAAAGCAGAG TTGACAAACA
  GAATGAAAAT CTAACAGGAA AGCAAAAGAA GAAAATTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38562093	mCV23067016	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146822672	ENSMUSSNP1656467	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29335615					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13428190 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	461 bp upstream
Cpgi1315	CpG island 1315	405 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	493 bp upstream
Rr427802	regulatory region 427802	121 bp proximal
Rr427803	regulatory region 427803	382 bp proximal
Rr427804	regulatory region 427804	459 bp proximal
Rr427805	regulatory region 427805	664 bp proximal
Rr427806	regulatory region 427806	1946 bp proximal
Tssr92399	transcription start site region 92399	741 bp upstream
Tssr92400	transcription start site region 92400	799 bp upstream
Tssr96771	transcription start site region 96771	409 bp downstream
Tssr96772	transcription start site region 96772	553 bp downstream
Tssr96773	transcription start site region 96773	617 bp downstream
Tssr96774	transcription start site region 96774	665 bp downstream
Tssr96775	transcription start site region 96775	694 bp downstream
Tssr96776	transcription start site region 96776	709 bp downstream