rs29336595 SNP Detail

Summary

• ID
  rs29336595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85893977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCATTTGT CAAAACAAAA GCAGCCACAA GAAAGCGTCT
  AGATAATGGA GTCTGGAATG GTTGTCACAT GGTGTGACAG GGTACCTTTA ACTGACCTGT
  Y
  GACAGTATAT GCCAAATATA CACCACTAAA CAGAGAAAAG GCAGCTTATA AGATAGCACG
  TGCTTGCTTT TCATTTTAGC ATTAATGTAC AGAGTCATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38565394	mCV27559965	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss47920095	NES12031426	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T	C		C	C	C	C		C
ss147216546	ENSMUSSNP2039431	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss323373266	CHEV_10_85520858	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29336595					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920095	NES12031426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85893977 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	1377 bp distal
Rr223758	regulatory region 223758	within coordinates
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	482 bp upstream
Tssr98760	transcription start site region 98760	465 bp upstream