rs29337335 SNP Detail

Summary

• ID
  rs29337335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126911133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACCTGAC TGAGCAATCA TAACCGGGGC TGGCTGTCGG
  AGCTGAAGGG CCAACGCTAG AGGGGGCAGG AGGTGTAAGA GGTAGTGCAG TGTGGGTTGT
  R
  GGTTTGAAGC TCACCAGTCA GGAAGTGAGG CCGACAGACG GAAGGGCGGG CAGGGTCGAG
  GAGTTCTGGG GCACAGCAGA AGGGGCCTTC TGAAGTTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38566041	mCV25221909	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss50942021	NES14261655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G		G	G	G		G
ss147728503	ENSMUSSNP5278716	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss323528885	CHEV_10_126512320	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29337335					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942021	NES14261655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126911133 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	21 bp upstream
Rr440765	regulatory region 440765	1950 bp distal
Rr440766	regulatory region 440766	359 bp distal
Rr440767	regulatory region 440767	within coordinates
Tssr96119	transcription start site region 96119	1 bp upstream
Tssr96120	transcription start site region 96120	65 bp upstream