rs29337731 SNP Detail

Summary

• ID
  rs29337731
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCGCAC AACCGCCCTC
  CCCACCCTCT CCTCCCGGAC ACCGCCCGGG CCCCGCCTTC CCGGGACCGG AGGTGTGTGA
  CAAGCTCTCA GAAGAGGCCA CGTCCCCTCT TGGAGATCGC TAGTCCTGCT GCCCGGCTCG
  GGGCGGTAAA CGGACAGGCG ACAGACAGCC TCTCCTCTCA GGGAGAGACA AAACAACAGT
  W
  CTAAACTAGA CCTAGGAATC TGAGACCTTG GCGACCAGTA CAGATTCCCA CCTTCTCAAC
  CCAGCTCTCT CCCGCCCAGG CAGGGGACGC TGAGCTTCCA GGGAAAGTGC AGAAGTTGGC
  TACAGCTACT TCGGGACCCG GGCGGTGGAA CTGCAGAAAG GTCCCACCTC CTTTCAACCC
  CCGCCCCATT CCCTAGGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38564655	mCV23883041	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss146804273	ENSMUSSNP654379	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss323253696	CHEV_10_12588304	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29337731					SNP	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	777 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	936 bp downstream
Tssr92368	transcription start site region 92368	74 bp downstream
Tssr92369	transcription start site region 92369	461 bp upstream
Tssr96723	transcription start site region 96723	319 bp upstream
Tssr96724	transcription start site region 96724	279 bp upstream
Tssr96725	transcription start site region 96725	202 bp upstream
Tssr96726	transcription start site region 96726	578 bp downstream
Tssr96727	transcription start site region 96727	638 bp downstream
Tssr96728	transcription start site region 96728	983 bp downstream
Tssr96729	transcription start site region 96729	1124 bp downstream
Utrn	utrophin	within coordinates