rs29338183 SNP Detail

Summary

• ID
  rs29338183
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7740294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TCAGCTCTGC AGGGTGGGAC
  K
  TACTCAGCTT TTGGGAGATG GTAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38557299	mCV22668170	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss146757856	ENSMUSSNP6992582	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323244390	CHEV_10_7584328	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29338183					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7740294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	1878 bp distal
Rr216483	regulatory region 216483	1494 bp distal
Rr223547	regulatory region 223547	762 bp distal
Rr223550	regulatory region 223550	within coordinates
Rr223552	regulatory region 223552	209 bp proximal
Rr384104	regulatory region 384104	157 bp upstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates