rs29338328 SNP Detail

Summary

• ID
  rs29338328
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8516844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCATCCGAT GTTGTTTTTG CATGTAAACA AGCACTTCCT
  TTCTTAGACT TCTGCAGTGG GACAAAGAGC GACTAAGCAG GTCTGTCCAT AACAGAATTT
  W
  AAAAGTGTCA GCACTTTTGT TTGAGCAAAC GAAGGGGCTT TTGGTTATGA TTTCCGATTG
  AGTTTAAAAA CCTGGCTGGT TCACACAGTA ATGCTGAGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38562430	mCV25374879	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				T		A
ss50811418	NES14194964	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		A	A	T	A	T	A	A	T
ss146765742	ENSMUSSNP5632921	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29338328					SNP	T	T	T	T	T	T	T	A	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50811418	NES14194964	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8516844 () rs orientation: forward

Symbol	Name	Function Class
Gm24374	predicted gene, 24374	1854 bp upstream
Rr223734	regulatory region 223734	1261 bp proximal
Rr229180	regulatory region 229180	within coordinates
Rr384116	regulatory region 384116	704 bp downstream