rs29338785 SNP Detail

Summary

• ID
  rs29338785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5205492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATATCA GCTCTCTGCA
  GGAGGTCACA TTAATTTCCC ATCCCTTGAA ATAATCACTT CTTTTTCATA GGAATGAACC
  CTTTGGTTCT GATAGAATTA CCTGAAGATC TCGCAACATT GTCTCATGGG CATTGGTGTC
  ACCCTCATGC ACTGAACATC GGTCAAGTTT CTCTTGTTCT TGCTCCAGCC AACTTTCAAA
  Y
  GCCTTTAGGT CTCTCTGATA CTCTTGATGA AGGCGGACCA GCTTTTCCAA TTTTGTCACT
  GCTTCCTGTC ATCGGCATTT AAAATGAGTA AGAAAGAAAC ATTATCACTG AATGCAGAAT
  TCACTTTTGG AGTTTAATCT TTTTTATGCT TGTTTGTGTG TGTGTGTGTG TATGTGTGTG
  TGTGTGTGAG TGTGTGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38564066	mCV23713782	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss52117741	NES15256557	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	G	A	G	G	G		A	G	G	A		G
ss146738488	ENSMUSSNP6668710	ENSEMBL	ENSEMBL_Sanger	r	SNP		A						G
ss323239421	CHEV_10_5091049	CHEVERUD	SCREENING_POP	r	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29338785					SNP	T	T	T	T	T	C	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52117741	NES15256557	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5205492 () rs orientation: forward

Symbol	Name	Function Class
Rr227855	regulatory region 227855	1493 bp distal
Rr230259	regulatory region 230259	1264 bp proximal
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates