rs29339012 SNP Detail

Summary

• ID
  rs29339012
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42739776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTAAA AATTACCCTT
  TCATCAATAA GGTGATAATT AACTTTCTCT AGAATTAGCC ATTCTCCGAG CCCCGGGCAG
  TATGCCGCCT GCTAAGTTCG TTGGCATACT GCCAATTTTT AACAATTGGT CTCTTGGCAA
  AGCTAGTGAT TTTTAATTCA AATATCTATT GTGGCATTTT CAGTTGTGGC TCAAAGACCA
  K
  TAAGATCACT CAAATCCTGG CGAAATCTCT GAGACCCAGA GTAGCTCGGA ATATTTGGGT
  CGCATTAGAA TTAGTTACTT TCTCTTTCTT CGTTTTCCCG TTTCTTCCTT TCCCTCGGCA
  AACCCCAGTC TTCTGGCTGG ACGCCATGGT GATGAATTAT GGTTTGCGAG CCTGTGCACA
  GCCCCCGGGC TTCATTCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38566321	mCV23431152	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss47857585	NES11970998	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		T	G	G	T	G	G	G
ss147083903	ENSMUSSNP2026437	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29339012					SNP	T	T	G	G	G	T	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857585	NES11970998	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42739776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	321 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	909 bp upstream
Rr368979	regulatory region 368979	1250 bp downstream
Rr430643	regulatory region 430643	681 bp distal
Rr430644	regulatory region 430644	within coordinates
Rr430645	regulatory region 430645	891 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr97454	transcription start site region 97454	217 bp downstream
Tssr97455	transcription start site region 97455	441 bp downstream