rs29339161 SNP Detail

Summary

• ID
  rs29339161
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13841380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCGATAC CCGCTCTCAG CGGAGATCTC GGCTCCGAGG
  CAAGAGAGCG CGACCGCGAC CTTCCCTCCC CGCGCGCCCG CATCAGGGCC AGTCCGGGTC
  K
  CACATCCTTC GCCCCGCTGG CCTGCTCCAG ACTGGTTTTT CTGGTTCAGC CTCCCTCCCA
  GGGACGCGCT GGGGGATCCG ATGACGTCGC TGGCTGAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38565288	mCV23171725	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29339161					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13841380 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	138 bp upstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	within coordinates
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	439 bp upstream
Rr384171	regulatory region 384171	179 bp downstream
Rr427854	regulatory region 427854	1006 bp distal
Rr427855	regulatory region 427855	within coordinates
Rr427856	regulatory region 427856	96 bp proximal
Rr427857	regulatory region 427857	631 bp proximal
Rr427858	regulatory region 427858	754 bp proximal
Tssr3141	transcription start site region 3141	475 bp upstream
Tssr92402	transcription start site region 92402	989 bp downstream
Tssr92403	transcription start site region 92403	822 bp downstream
Tssr92404	transcription start site region 92404	789 bp downstream
Tssr92405	transcription start site region 92405	761 bp downstream
Tssr92406	transcription start site region 92406	593 bp downstream
Tssr92407	transcription start site region 92407	388 bp downstream
Tssr92408	transcription start site region 92408	357 bp downstream
Tssr92409	transcription start site region 92409	324 bp downstream
Tssr92410	transcription start site region 92410	297 bp downstream
Tssr92411	transcription start site region 92411	143 bp upstream
Tssr92412	transcription start site region 92412	215 bp upstream
Tssr92413	transcription start site region 92413	247 bp upstream
Tssr92414	transcription start site region 92414	457 bp upstream
Tssr92415	transcription start site region 92415	538 bp upstream
Tssr92416	transcription start site region 92416	570 bp upstream
Tssr92417	transcription start site region 92417	603 bp upstream
Tssr92418	transcription start site region 92418	632 bp upstream
Tssr92419	transcription start site region 92419	1341 bp upstream
Tssr92420	transcription start site region 92420	1373 bp upstream
Tssr92421	transcription start site region 92421	1498 bp upstream
Tssr96784	transcription start site region 96784	8 bp downstream
Tssr96785	transcription start site region 96785	26 bp downstream
Tssr96786	transcription start site region 96786	1114 bp downstream
Tssr96787	transcription start site region 96787	1144 bp downstream
Tssr96788	transcription start site region 96788	1185 bp downstream
Tssr96789	transcription start site region 96789	1840 bp downstream
Tssr96790	transcription start site region 96790	1997 bp downstream