rs29339976 SNP Detail

Summary

• ID
  rs29339976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12745303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTCGCC GCTCGCGCGC
  CCCGGGGCCC CAGGCCGGGC AACTTTGTTC TCCCGGGGAG ACCAGTCCCC CTCGGCTCCG
  GGTTCGGTCC TGCCCCGGCC TGGGAAGCCA CCGCGGGCCG GGCTCCCAGA ACGTGGCGCT
  TCGGGTCACC TGACCGCGCG CCCGGTCAAT CAGCGCTAGC CCTAGGCGCC CTCCCAGCCC
  R
  CAGCAGCCGG CTCCGTGCGG TGCGCGGTGC GAGAATCCCG GAACCAGTCG TGCGTGCTGG
  AAGCCAGAAG CTGGAATAGT CACCGCGCGC ACGCACCGTG CCCTTTATTC AAATTGTCCG
  AAAATGTGTG TCACACCCCT CTAGGCACAC TAGGTCTCTT ATCAACAGTA CTTTTAATTT
  TTTTTATTAT TATCTTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38571822	mCV23883030	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss146804286	ENSMUSSNP4828819	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss323253700	CHEV_10_12589357	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29339976					SNP	G	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12745303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1830 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	72 bp upstream
Tssr92368	transcription start site region 92368	1127 bp downstream
Tssr92369	transcription start site region 92369	578 bp downstream
Tssr96723	transcription start site region 96723	1372 bp upstream
Tssr96724	transcription start site region 96724	1332 bp upstream
Tssr96725	transcription start site region 96725	1255 bp upstream
Tssr96726	transcription start site region 96726	422 bp upstream
Tssr96727	transcription start site region 96727	337 bp upstream
Tssr96728	transcription start site region 96728	42 bp upstream
Tssr96729	transcription start site region 96729	71 bp downstream
Utrn	utrophin	194 bp upstream