rs29340290 SNP Detail

Summary

• ID
  rs29340290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86287593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATCTGAT CTAGTCAGTT
  CCCGGGTTGA TGCTCTCAGG CGATTCTACA CTGAGACAAG ATGACACTGA AAATGAACTA
  CCACCATGAC TAGAGTTAGC AAACATTTAA ATACAATATT TGCATCCCTT CTTTGATGAC
  TACAGCTCAT AAGGACACAT CCAGACTGTA GCAGCATGGC AATGGCCAGC GTGGTCTTTA
  S
  TCTTAATTCC CATTCTTCCC TAGTTCTCAG TTACTCTCCT CTCTCCATTC TTCACTCTGC
  ACCCCTGCAG ATTCCAGTGT TCTTCTCCCT AGTACTTGAC CTTCTCATCA ACCCCCAAGA
  GGGAATGGGG CAGGATCGCC ACCCATATCC TGTAGATGGA GAAGTTGCCA TTTAAGGTCT
  CATAAGTTTC CCATAGTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38568406	mCV23610122	ABI	CRAMUS_MOUSE	f	SNP		G	G				C		C
ss47923723	NES12028027	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C		C	C	C	C		C	G	G	G		C
ss147219936	ENSMUSSNP56450	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
ss323373941	CHEV_10_85914474	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29340290					SNP	C	G	G	G	G	C	C	C	C	C	C	G	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923723	NES12028027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86287593 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	8 bp proximal
Rr229241	regulatory region 229241	304 bp proximal
Syn3	synapsin III	within coordinates