rs29340669 SNP Detail

Summary

• ID
  rs29340669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127125257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA CCCGCCTCTC CAGGTCAACA
  Y
  GTCACAACAC GACCTCAGCC TGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38575842	mCV25221169	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147730853	ENSMUSSNP59168	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323529345	CHEV_10_126726444	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29340669					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127125257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	within coordinates
Cpgi2350	CpG island 2350	937 bp proximal
Ddit3	DNA-damage inducible transcript 3	1405 bp upstream
Gm4189	predicted gene 4189	305 bp downstream
Gm20492	predicted gene 20492	within coordinates
Gm66222	predicted gene, 66222	621 bp upstream
Mbd6	methyl-CpG binding domain protein 6	370 bp upstream
Rr369092	regulatory region 369092	1080 bp upstream
Rr402323	regulatory region 402323	1 bp downstream
Rr402324	regulatory region 402324	1944 bp upstream
Rr440863	regulatory region 440863	893 bp distal
Rr440864	regulatory region 440864	509 bp distal
Rr440865	regulatory region 440865	222 bp distal
Rr440866	regulatory region 440866	131 bp proximal
Rr440867	regulatory region 440867	896 bp proximal
Rr440868	regulatory region 440868	1231 bp proximal
Rr440869	regulatory region 440869	1950 bp proximal
Tssr3392	transcription start site region 3392	437 bp downstream
Tssr96176	transcription start site region 96176	1303 bp downstream
Tssr96177	transcription start site region 96177	867 bp downstream
Tssr96178	transcription start site region 96178	837 bp downstream
Tssr96179	transcription start site region 96179	615 bp upstream
Tssr96180	transcription start site region 96180	1398 bp upstream
Tssr99755	transcription start site region 99755	958 bp upstream
Tssr99756	transcription start site region 99756	928 bp upstream
Tssr99757	transcription start site region 99757	755 bp upstream
Tssr99758	transcription start site region 99758	614 bp upstream
Tssr99759	transcription start site region 99759	542 bp upstream
Tssr99760	transcription start site region 99760	470 bp upstream
Tssr99761	transcription start site region 99761	391 bp upstream
Tssr99762	transcription start site region 99762	353 bp upstream
Tssr99763	transcription start site region 99763	321 bp upstream
Tssr99764	transcription start site region 99764	950 bp downstream