rs29340948 SNP Detail

Summary

• ID
  rs29340948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78248893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGAAGGCCG GATCCTGCGG GGCCCACGCA GCGGAGCTCG CCTGCCCTCC CGCCCGCGTA
  CCTGTCGCCC GCTGCGACCT GGCCTCGATG TACTTCCGCA GCTTCCGCAA CGCGCGGTCC
  CGCGTCACCT GTTCATTGCC CGCCAGGCGC TGCGCCAGCT GGATCTCCGG CGGGAGCGGC
  ACTCCGGGAA CCATGGTGAG GAGAACCCTG AGACCACGCA CTCGACGCTT CCGCTGGGGC
  GCTCGAGTGA CGACACGCGC TCGTCACCAC TGAACGTCAC ACTGAGGCGA CACAACCCAG
  M
  TAGACGTCAA ACGTCCTGGA CGATGCTGGC GTACGCTACC GCCTCTCAGT GGCCGAGAGG
  CGCAACTGCA CCCTGCAGGG AGGAGGATGG TCTGGTGTAA GCCTAGGGCA TCTCTGATTC
  TTGAAAAGGT TAAAGCATTG TCTTGGGTTC GCCCTCCTCT TTACTGCAGC AGGAGTGGCT
  GTATTACAAG AAGATCGTGA TGTGGCCCAG CTTGTCCTCA ACTGTAACAC TTAGCAGGAC
  TGCGTGGAGC TGCCCTTGGC TCAGCATCCT GAGCCATGTT GGGGTGTGGG GTGTGGGTGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38570879	mCV27565574	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss147176997	ENSMUSSNP5116706	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29340948					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78248893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1780	CpG island 1780	within coordinates
Rr216578	regulatory region 216578	1908 bp proximal
Rr225082	regulatory region 225082	within coordinates
Rr228917	regulatory region 228917	1803 bp proximal
Rrp1	ribosomal RNA processing 1	16 bp upstream
Tssr3266	transcription start site region 3266	132 bp upstream
Tssr98302	transcription start site region 98302	197 bp upstream
Tssr98303	transcription start site region 98303	38 bp upstream