rs29340964 SNP Detail

Summary

• ID
  rs29340964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42752517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAGGAA CCCTTGAGGG
  TGTGGGTCTT GAACAAAAGG AAACCAGAAA GGAGGAACTT AACTCCCGAG TCTCCTGCCA
  CCCCCAACTC CCACACTCAG ATGGCTCCGC TTGGCTGTGT TGTCCAGCTC CATGGTCAGC
  TTTTACTCTA AGCTAGTGTG AACCAGAGAG GTGCATGCAG GCCTTCAACG CAGATAGGGA
  Y
  CATATTCTGT TGGCTCTAAT CTGTCTTGGG GGCCCTAGTT TTAAAATGCT TTTCTTAAGA
  GATTAAAAAA AAAAAAAAAA AGGATTGTCC AGGTAATATC TTGTGTTAGA AGAAACTGCA
  AGAGCTAAGT CAATTTAGGA AATTCACAGA GGTATGCATG GGTGCTCATG TATGCACATA
  TATAATTTTA GATAACTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38572476	mCV23303342	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147084098	ENSMUSSNP4352528	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29340964					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42752517 () rs orientation: forward

Symbol	Name	Function Class
Gm66346	predicted gene, 66346	within coordinates
Rr219455	regulatory region 219455	717 bp distal
Rr222710	regulatory region 222710	551 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates