rs29341223 SNP Detail

Summary

• ID
  rs29341223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43870372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGACAA GTTGGTAAAC
  TGAAAGAAAA ACCTAAAATT TAAAACAAAA ATGAAGAAAT ACATTTAACA TAAACCACAA
  GCAACAAAGC CTAAGACCCA AAGAAAGACA TTTTGAAAAA TATCACAAAA GGCCTAGAAG
  TCAGCGAAAC TCTTTATTTC TTCTTTTATG CCATCTGACT CCGTTTCAGA GAGAAAATAT
  K
  TTTTTTCCCA TTTTGTGTGT GTGATGTTCA TGTGTGAGCA CACATGTATG TGAGTGTGGA
  GACTGGAGGT CGACTGTGGG AGTTGTTCTC TCTTCCTGCC ATATATATTG AAGCAAGGTC
  TCTTAACCGA ATCCATAGCT CACCAATAGG TTTAGTCTAG CTAACCAGTC TGCTCTGAGG
  ACCTTGTGTC TGCCTTTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38572294	mCV25442723	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss147089771	ENSMUSSNP6129411	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29341223					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43870372 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	914 bp upstream
Rr430903	regulatory region 430903	1670 bp proximal
Tssr97483	transcription start site region 97483	1961 bp downstream