rs29341509 SNP Detail

Summary

• ID
  rs29341509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAAGCA ACTTGAAAGT
  CTGTTTCTAA ATGAATGAAC CCCAAAGAAA CTGGCCTTCC GAAATAAGTG GAGAAACCAA
  ATTTTATCCT GAAAAACCGA GTTGTTCCCA ATAAACACTT AAATGACCAT GAATAAGGAC
  CAAGTGTTAT TAGCTAAATT AATGTTTTCA TTGATACTCA AGTAACCTGT ATCAAATCTA
  R
  GGACAAGATA TTTATCTGGC ATCTAGATTC AATGCTCTTA CTGATTTTAA ATCACTAATT
  CCTTCACTCA TCCACAGAGC CTCGCTTTGT GGCTCTCAGA CTTGGCTGAA ACTCACTCAC
  TACCTACCCC ATGCAGGCCT CAGGCTCAAG CTAACCCTCC AACTTCAGCC ACTGAAGCAT
  CAGGATTTCA GACACGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38574256	mCV25201831	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss146743555	ENSMUSSNP4246766	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		C
ss323240838	CHEV_10_6081358	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29341509					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215183 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1197 bp upstream
Cpgi1267	CpG island 1267	1119 bp proximal
Cpgi1268	CpG island 1268	394 bp proximal
Gm67397	predicted gene, 67397	297 bp downstream
Gm67407	predicted gene, 67407	119 bp upstream
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	707 bp proximal
Rr426945	regulatory region 426945	1613 bp proximal
Tssr3113	transcription start site region 3113	934 bp upstream
Tssr3114	transcription start site region 3114	1347 bp upstream
Tssr92240	transcription start site region 92240	1140 bp upstream
Tssr92241	transcription start site region 92241	1170 bp upstream