rs29341515 SNP Detail

Summary

• ID
  rs29341515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4218596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAACATA GCTCCAGTTT
  GGAAATATAG TCATTTTAAG ATATAATTGC TAAAAATCTG CAGTCAGGAG ACTTTTTTTT
  TAACTTTGGT TTTTATATGA CGTCAAGGTT TATTATCTGT TTACAGTAAG TTATGAACCT
  TTCTTTTCTT CCTTCCACGC CATCCCGTAG CCTGCATCCC CCCTCCCCCT CGCCATCAAC
  Y
  GCCATCTTGA AACATCCAAG CAGTCTCTTT TAAAAGATGA CTTGGTGACA CCATTAATTT
  GTTGGCCCGC TTCCCAGTTA TCAATTTGAA GATGGATCGA TCCACATGCA CGTGCTTGCT
  GCACACATAC GTGTATGTTA CTTCCTTCCA CCCACAGGTT ACCTAGGGTT GAAGACCTAA
  GACTTTTCAG TAGGATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38571519	mCV25202129	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146743537	ENSMUSSNP3937431	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		G
ss323240831	CHEV_10_6077945	CHEVERUD	SCREENING_POP	r	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29341515					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4218596 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	1454 bp distal
Gm67397	predicted gene, 67397	within coordinates
Rr384064	regulatory region 384064	515 bp upstream
Rr426945	regulatory region 426945	1300 bp distal
Tssr92242	transcription start site region 92242	112 bp downstream