rs29341601 SNP Detail

Summary

• ID
  rs29341601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40549008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACTTAC ACATACAATA
  CACATACTGT ACACACTACA CATACCACAC ACACACCACA CACATACACA CACATACACA
  CACGTATACA CACATACTAC ACACACATAC ATATACACAC ATATTACACA CACACACACA
  CATGTACACA CATCCCTCCA CCCTCTCTTT GTTGTCCACC CCGGGTGGTG TTTCTCCTGG
  Y
  TATCCTTTGT GACACGGAGT GATTTCTCCT CTCTCCTAGC AACAGCAGAG TCCATTTAGA
  AGGCATCTAT CTTCCTTTCT GAGCAACTGG CTCAGTCAGT TGGGAAAGCG GGAGACAAGG
  CAGGGGGCGG CTCTAGGCCT CCTGCTCCCT CTCAGTGGAA GCTGCTCTCA GCTTCGGAAA
  ATTCCAGAGG GAGGGATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38569267	mCV24874415	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss61273172	NES16893917	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29341601					SNP	T	T	C	C	C	T	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273172	NES16893917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40549008 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr430241	regulatory region 430241	1113 bp proximal
Tssr93028	transcription start site region 93028	57 bp upstream