rs29342239 SNP Detail

Summary

• ID
  rs29342239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATTAAC TGTTCTAACA
  ATACAGTGAA ATAAAAGGCC TATGTATCCT TACTCTTGGA CACTTGGACA TCAGGACCAT
  CAATAAGTAA AGTAGGGATC ACTGAAACAC AAGCACTGTG ATACCACGGC AATTGATCTG
  AAGAGTGAGA CAGCTACTAG TGAGTTGTAG TGTATACAGT ATATTTGTGC TGGCTTGTTT
  Y
  ATATCAATTT AACATAAGCT AGAGTCATAG GAGAGGAGGG AGTCTCAACT GAGAAAATGC
  CTCCACAGGA TACAGCTTTA GGCAAGCCTG TAGGGCATTT TCTTCATTAG TGATCCATGC
  AGGAGGGCCT AGCCCATCAT GGGAGGGTCA CTCCTGGCCT GGTGGTCCTG GGTGCTGTAA
  GAAAGCAGAT TGAGCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38575501	mCV25387045	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146748287	ENSMUSSNP4915063	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		A
ss323242355	CHEV_10_6607689	CHEVERUD	SCREENING_POP	r	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29342239					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1364 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1512 bp upstream
Rr222570	regulatory region 222570	1513 bp distal
Rr224667	regulatory region 224667	948 bp proximal
Tssr92214	transcription start site region 92214	1401 bp upstream
Tssr92215	transcription start site region 92215	1496 bp upstream
Tssr92216	transcription start site region 92216	1601 bp upstream
Tssr92217	transcription start site region 92217	1792 bp upstream