rs29342343 SNP Detail

Summary

• ID
  rs29342343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127922800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA TGCTAGATTG TAAAGGTTAA
  R
  TTAGAAACAA ATGCTCATTA GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38571379	mCV22823225	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147737925	ENSMUSSNP4747240	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323531645	CHEV_10_127523987	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29342343					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127922800 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Gm55458	predicted gene, 55458	1571 bp downstream
Mir677	microRNA 677	1568 bp downstream
Rr441098	regulatory region 441098	242 bp distal
Rr441099	regulatory region 441099	341 bp distal
Tssr96322	transcription start site region 96322	1403 bp downstream
Tssr96323	transcription start site region 96323	834 bp downstream
Tssr96324	transcription start site region 96324	764 bp downstream
Tssr96325	transcription start site region 96325	625 bp downstream
Tssr96326	transcription start site region 96326	609 bp downstream
Tssr96327	transcription start site region 96327	582 bp downstream
Tssr96328	transcription start site region 96328	542 bp downstream
Tssr96329	transcription start site region 96329	1382 bp upstream
Tssr96330	transcription start site region 96330	1442 bp upstream