rs29342458 SNP Detail

Summary

• ID
  rs29342458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117840248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTCAGGA GCCATTAAGG ATGGACCTCT GCCTCACAGA
  AGACTCCGGG TTTCACCTCC TAATTCTCTG CTAACCTTAA AAGGGAAAAC ATCACAAATG
  Y
  TCCCCTACCC CTGCCCCTTC CCCTAAGCCT CCTGAGTGAA ACAAAGCAAA ATAGAGCAAC
  AACAAAACCC ACTGCCTAGA ATGGAGATAC CCCATTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38569940	mCV24218863	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss147591178	ENSMUSSNP2432697	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss323501176	CHEV_10_117441399	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29342458					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117840248 () rs orientation: forward

Symbol	Name	Function Class
Gm37852	predicted gene, 37852	595 bp upstream
Igs80	intergenic site 80	1888 bp distal
Rr226004	regulatory region 226004	within coordinates
Rr385361	regulatory region 385361	1068 bp upstream