rs29343055 SNP Detail

Summary

• ID
  rs29343055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7739121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CGAACTTATG TAGTGAGGGA
  Y
  CACCTTGAAC TTCCGGTCCT CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38569073	mCV22668366	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146757832	ENSMUSSNP529494	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss323244380	CHEV_10_7583155	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29343055					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7739121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	705 bp distal
Rr384104	regulatory region 384104	1330 bp upstream
Tssr92330	transcription start site region 92330	1254 bp downstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates