rs29343140 SNP Detail

Summary

• ID
  rs29343140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3672784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCTG TGGTTCTGAC
  TTCAGAGGGA ATCAAACTGA TTTAGGGGAG AATGATCATT TGGGGGAAGC AGTGCTTGGC
  CCCCCTGGCT GAAAGCACAG TGTCCCATTC ACTGAGCTGA TCCTAAAAGG ACTCAAAAAG
  CAGCTACTGC AATTTAGGGC CAGTTGATGG ATTTAAGGGC TGCTGGCTCT TTGTTGAAAT
  K
  CATATTAATA AAGAAGAGGG CTTTATAAAA ACTCACTGTT GCGTACAGGG ATCCACAAGG
  GATCACAGTG CAATGATTAT TATATTCACA CAACTAAAGA GGTAGGTAGA GTGGGTTCCC
  TTGTGTTGGG CTTTGCATTC TTAAAAGGAA GTAGGCTTTG GAAGAACTTA TCCATAAAAT
  CTGCAGAATG AACTCAACGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38574747	mCV25387175	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss146748584	ENSMUSSNP5560197	ENSEMBL	ENSEMBL_Sanger	r	SNP			C
ss323242460	CHEV_10_6623757	CHEVERUD	SCREENING_POP	r	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29343140					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3672784 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	1184 bp distal
Rr227319	regulatory region 227319	within coordinates