rs29343944 SNP Detail

Summary

• ID
  rs29343944
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67972372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC TGTGCTCAGG AAAGCTCCGG
  S
  AGGGGACGGT TCCCCAGCCG CATCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38574996	mCV24239206	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147146170	ENSMUSSNP2890903	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323351600	CHEV_10_67599290	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29343944					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67972372 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	within coordinates
Rr384864	regulatory region 384864	within coordinates
Rr433196	regulatory region 433196	1660 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	within coordinates
Rr433199	regulatory region 433199	74 bp proximal
Rr433200	regulatory region 433200	1637 bp proximal
Tssr3230	transcription start site region 3230	183 bp downstream
Tssr3231	transcription start site region 3231	199 bp downstream
Tssr3232	transcription start site region 3232	265 bp downstream
Tssr93877	transcription start site region 93877	461 bp upstream
Tssr93878	transcription start site region 93878	1240 bp upstream
Tssr97989	transcription start site region 97989	1258 bp upstream
Tssr97990	transcription start site region 97990	1241 bp upstream
Tssr97991	transcription start site region 97991	29 bp downstream
Tssr97992	transcription start site region 97992	71 bp downstream
Tssr97993	transcription start site region 97993	85 bp downstream
Tssr97994	transcription start site region 97994	108 bp downstream
Tssr97995	transcription start site region 97995	142 bp downstream
Tssr97996	transcription start site region 97996	160 bp downstream
Tssr97997	transcription start site region 97997	171 bp downstream
Tssr97998	transcription start site region 97998	237 bp downstream
Tssr97999	transcription start site region 97999	662 bp downstream
Tssr98000	transcription start site region 98000	819 bp downstream