rs29344425 SNP Detail

Summary

• ID
  rs29344425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13428830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGCGGTGG CGGCGCTAGG TGCTCTCCAG AAACCACAGA
  CGTTTCTCTG AGCAGAGGTT GTGGCTTAAG CGGAGGAAGG GGGCGTGGAC TAGAGCGGAG
  Y
  AGCGACGCTT TCGGTCCCCC AGCCGCCGCT TACTGATCCG GGACGCCTGG GTCCGTCCGC
  AAATAGCTCC CGGGTGCCTC GTCTTTTCCC GTCCTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38578117	mCV23067018	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146822682	ENSMUSSNP5824601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29344425					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13428830 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	within coordinates
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	within coordinates
Rr427802	regulatory region 427802	259 bp distal
Rr427803	regulatory region 427803	182 bp distal
Rr427804	regulatory region 427804	within coordinates
Rr427805	regulatory region 427805	24 bp proximal
Rr427806	regulatory region 427806	1306 bp proximal
Tssr92399	transcription start site region 92399	101 bp upstream
Tssr92400	transcription start site region 92400	159 bp upstream
Tssr96771	transcription start site region 96771	216 bp upstream
Tssr96772	transcription start site region 96772	25 bp upstream
Tssr96773	transcription start site region 96773	1 bp upstream
Tssr96774	transcription start site region 96774	25 bp downstream
Tssr96775	transcription start site region 96775	54 bp downstream
Tssr96776	transcription start site region 96776	69 bp downstream