rs29345108 SNP Detail

Summary

• ID
  rs29345108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125145447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATGCAAC TATGATCATG ATGTAAAGTG GATTTTATTA
  ATTACTGGAA AAATGCCATT AGTGTTCCTG CAGTTTATAA CGCTAAAGTG AGACGTGTAA
  R
  AAAACTACTT CCTCAAAGTC ACTGAGTGTA GTAAAACTAT TATATATAAT ATACTACAAA
  ATACTTTAAG CTAATGTAAC ATATTTACTT AATTATTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38579118	mCV23876863	ABI	CRAMUS_MOUSE	f	SNP		G	G					G	A
ss50936247	NES14269284	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		A	G	A	G	G	G	A
ss147698330	ENSMUSSNP3770191	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29345108					SNP	G	G	G	G	G	A	G	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50936247	NES14269284	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125145447 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	within coordinates
Rr213395	regulatory region 213395	1354 bp proximal
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	603 bp downstream
Tssr96087	transcription start site region 96087	573 bp downstream
Tssr99673	transcription start site region 99673	777 bp upstream
Tssr99674	transcription start site region 99674	772 bp upstream
Tssr99675	transcription start site region 99675	753 bp upstream
Tssr99676	transcription start site region 99676	725 bp upstream