rs29345252 SNP Detail

Summary

• ID
  rs29345252
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTAACTG AGGGTTGTCT TTCCAAGACA AAGGGTTTAA
  AGCAGTGTGT GTGTGTGTGT GTGTGTGTGT TGCTCCTTCC CTGGGACCCA ATGCAGTCAG
  M
  CTAGGCAAGC ACTCTACCAC AAAGTTACAA TTCCAGCATC AAGATTTTTA TCCTGTTTCT
  AACTTTCCTC TCAGCCAGTG AACTCAACTA TATCACCAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38577909	mCV23067003	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss146822657	ENSMUSSNP3420507	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29345252					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427919 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	732 bp upstream
Cpgi1315	CpG island 1315	676 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	764 bp upstream
Rr427802	regulatory region 427802	392 bp proximal
Rr427803	regulatory region 427803	653 bp proximal
Rr427804	regulatory region 427804	730 bp proximal
Rr427805	regulatory region 427805	935 bp proximal
Tssr92399	transcription start site region 92399	1012 bp upstream
Tssr92400	transcription start site region 92400	1070 bp upstream
Tssr96771	transcription start site region 96771	680 bp downstream
Tssr96772	transcription start site region 96772	824 bp downstream
Tssr96773	transcription start site region 96773	888 bp downstream
Tssr96774	transcription start site region 96774	936 bp downstream
Tssr96775	transcription start site region 96775	965 bp downstream
Tssr96776	transcription start site region 96776	980 bp downstream