rs29345597 SNP Detail

Summary

• ID
  rs29345597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117937876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGTAGCC CCTTTACTGA GGTTGGGTGT GATGAGGAAG
  AAGCAGGGGT GTGGTGTTTG TGCGTGTTGG GGCAGGGGAG GTAGAGGAAG TTAGATTCTG
  W
  TATGAGAGGC TAAGTAAAGG TATCATACCG GGGTGAGCAT TTCTAGGAGA TACTTGGATA
  TACACTAAAG GCCTGGGGGA GGAGAATGGA GACAGATAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38578958	mCV24220246	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss147594627	ENSMUSSNP5149793	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323501461	CHEV_10_117539027	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29345597					SNP	A	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117937876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	1227 bp proximal
Gm66186	predicted gene, 66186	1052 bp downstream
Gm66289	predicted gene, 66289	764 bp upstream
Rr369079	regulatory region 369079	1240 bp upstream
Rr402279	regulatory region 402279	982 bp downstream
Tssr3367	transcription start site region 3367	1 bp downstream
Tssr99497	transcription start site region 99497	1270 bp downstream