rs29345876 SNP Detail

Summary

• ID
  rs29345876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115668877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAAACAA CTTTAAAGGG CCATTATTGT TCCTCCATCT
  AACATCTACC ATTTCACTCT AGGACAATTC AAGGCTGGAA ACAGGACTCA GGAGGTGCCA
  M
  CATTTCAATA AAATGTGAGC TGCGCCGGGG CAGAGACTAT TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTAC TGGTTTAGGT CACAAAAGTT TCTCAGGGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38579395	mCV22877366	ABI	CRAMUS_MOUSE	f	SNP		A	C						C
ss61319841	NES16926008	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	A	A	C	A	A	A	C	A	A	C
ss147580988	ENSMUSSNP5910707	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29345876					SNP	A	A	C	A	C	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61319841	NES16926008	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115668877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr385334	regulatory region 385334			288 bp upstream
Rr439263	regulatory region 439263			834 bp proximal
Tspan8	tetraspanin 8			Intron
				mRNA-UTR
Tssr95839	transcription start site region 95839			67 bp upstream