rs29346722 SNP Detail

Summary

• ID
  rs29346722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8858518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGCAC TAGACCCTTG
  GAGAAGGTAC CACAGGCAGC TGTGGGCCAT CCAATGTGGG GACCTCTACA TGAGCAGTTT
  GTGCTCTTAA CCAATGAGGA ACCTCGCCAG CTTCTGCAGA CGTGCACTTA TCTGTCTATT
  TATATCCCTG TTATGTTCAT TTATTCTCAT CCCCTGTATG AAGCATGTCC CAGGGATGAG
  R
  GTCATTTTAC ATTTTTATAT CTTCATTTCC TCACAGAGGA GTGTTTTTTC AGAATATTTA
  AGTTAAAGAT ATTAGTTGAA TGAATGGCTT TTGAACCAAA TGGATACAGT TTGCATTGAG
  TTGTAGGTTG ACAGTTCATA CGTCATCCAC TTAGTTTCTA TGAATCTCTT TTGTGTGAAT
  TGTTAAGCCA GATCAATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38582154	mCV25039720	ABI	CRAMUS_MOUSE	f	SNP	A	G					A
ss52141016	NES15241413	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A		A	A	A	A		G	A	A	G		A
ss323246165	CHEV_10_8702572	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29346722					SNP	A	G	G	G	G	A	A	A	A	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141016	NES15241413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8858518 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	83 bp proximal
Rr223852	regulatory region 223852	560 bp proximal