rs29347199 SNP Detail

Summary

• ID
  rs29347199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42753873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC GCTCCAGTTG TATCTCTGCT CTACTCAGAA
  ATGCCCAGTG GCTCTTCATC CAGCTCAAAA AGAAAAGTGT TTTCAGTGAC CCAAGAATAG
  CAATACGAGG TCCCCATTGT CTCCTCTACC TCACTCCCAA CCGTGTTCCT TCATTTTGTA
  Y
  CTGGCTTGTT AGTTTTGACA CACCAAGTCC ACAGCTGCCC CAGGGATTTT ACCTGTTGTT
  CTGTTTCTCT AGGATGTCTT CACCACAGTC CTTAGGACTT TAAGTGTCTT GGAGTTTGCT
  TGCGCATCCT TTAGAGAGAC CCTCCCTCCC AGCCCTCCCT GCATCAGGCT TTACTGCCAC
  TTTTAAGCTG ACCTTTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38586238	mCV23303352	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147084113	ENSMUSSNP766452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29347199					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42753873 () rs orientation: forward

Symbol	Name	Function Class
Gm66346	predicted gene, 66346	within coordinates
Rr222710	regulatory region 222710	407 bp distal
Rr227614	regulatory region 227614	1129 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates