rs29347492 SNP Detail

Summary

• ID
  rs29347492
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8761826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGTCCC CGCGCTGCCC
  ACCGCTCGCA GCAGCGCGTC GGCCGACGGG GCGCAAGTTC CCCGCCCGCG GCGTCACCGG
  GCCGCGCCCC CGCGTCGCAT GCCCCAGGCT CCGCTGGGTA CGAGCACCAC TGCCAGGACT
  GGCACCTCGA TCCCGGGCGA CCGCGATTGA CAACTCCAGA AACTTTTCCT AGCCCGGCCC
  S
  GCGCAGCAAC AGGGTAGCTG GAGCAGAGTC CACAACACTG GCTGCGGCGG GGAGTTCACG
  GGACCAGGGA GACAAGAGCC ACACCGCACG GGTGCTGCGT CCTGCTTCGG GGACCGGCTC
  CGGGTGGCAC ACCACTCGCC TCTACTGGAG AGTTTGTGCA GGGCTGGGCA GGGGACAGTG
  ACGCCTGTGG ACCCGGGCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38585842	mCV23688387	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss323245671	CHEV_10_8605880	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29347492					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8761826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	within coordinates
Gm26674	predicted gene, 26674	within coordinates
Rr427411	regulatory region 427411	1886 bp distal
Rr427412	regulatory region 427412	within coordinates
Sash1	SAM and SH3 domain containing 1	12 bp upstream
Tssr92336	transcription start site region 92336	1984 bp downstream
Tssr96654	transcription start site region 96654	384 bp upstream
Tssr96655	transcription start site region 96655	197 bp upstream
Tssr96656	transcription start site region 96656	135 bp upstream
Tssr96657	transcription start site region 96657	52 bp upstream
Tssr96658	transcription start site region 96658	6 bp upstream
Tssr96659	transcription start site region 96659	10 bp downstream
Tssr96660	transcription start site region 96660	34 bp downstream
Tssr96661	transcription start site region 96661	119 bp downstream
Tssr96662	transcription start site region 96662	149 bp downstream
Tssr96663	transcription start site region 96663	443 bp downstream
Tssr96664	transcription start site region 96664	507 bp downstream