rs29347507 SNP Detail

Summary

• ID
  rs29347507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAAGGGTC ATATCAAAAC GTGTCCTGGT ACAATCCTCA
  CCGATGATGT GTCTACTCTT TCTACGATAC TTTTCTCTGC CCTTGTATTC CCTTCCTTCC
  Y
  GCGATTCTTA TAGATTGCTC ATCATGGAGA GCTCTGGTCG TATTTTTACA TGTTTTCCCA
  AGCTTATTAC CCATATCGAT GTGTGGCAGG GATAGACGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38579990	mCV23067215	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146822712	ENSMUSSNP1077405	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29347507					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429563 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	334 bp distal
Pex3	peroxisomal biogenesis factor 3	677 bp upstream
Rr368928	regulatory region 368928	508 bp downstream
Rr427802	regulatory region 427802	992 bp distal
Rr427803	regulatory region 427803	915 bp distal
Rr427804	regulatory region 427804	710 bp distal
Rr427805	regulatory region 427805	187 bp distal
Rr427806	regulatory region 427806	573 bp proximal
Tssr92399	transcription start site region 92399	580 bp downstream
Tssr92400	transcription start site region 92400	561 bp downstream
Tssr96771	transcription start site region 96771	949 bp upstream
Tssr96772	transcription start site region 96772	758 bp upstream
Tssr96773	transcription start site region 96773	734 bp upstream
Tssr96774	transcription start site region 96774	693 bp upstream
Tssr96775	transcription start site region 96775	666 bp upstream
Tssr96776	transcription start site region 96776	653 bp upstream