rs29347596 SNP Detail

Summary

• ID
  rs29347596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85891700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAGCCTG CTGGCTGAGC ACGGGGTCAT TAAAAGATGG
  TGAGACCAGA AATCAGGCAT TGCAGTGTGA ACATGATGCT AGCCTAGAAC TTGCAAGGTG
  Y
  GTAGTATTGC CCTTCTTAGG TACAGAAATT GGGGTTCCTA GGGACAAGTA TTTGGCTTAG
  ATAGGCCTTC TAGCAAGAAG CAGGGAGCAT GCACTGCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38578612	mCV27559958	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss47920083	NES12031525	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T	C	C		C	C	C	C		C
ss147216516	ENSMUSSNP713524	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss323373259	CHEV_10_85518581	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29347596					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47920083	NES12031525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85891700 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	501 bp proximal
Rr223758	regulatory region 223758	1415 bp proximal
Rr229208	regulatory region 229208	1701 bp distal
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	1782 bp downstream
Tssr98760	transcription start site region 98760	1799 bp downstream