rs29347626 SNP Detail

Summary

• ID
  rs29347626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103204929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAGATAGC GCAGAAATAG AATATAGCAC ACTGAAACGA
  AAGCGCTGCA CTTTTAACTT CCAGCCGAGG AAAGAATCAG AATCTTAGAG GTGCACTTGC
  S
  GGTGCAAAGG GAGACCCACC CGCTTTTAAA GTCTCCAAGG GTGGGCGTTC TTTTCCCTTC
  GGCCAAGAAA TGTCACTGAA TGTGCTCATT AGCATAACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38583199	mCV24987594	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss147416502	ENSMUSSNP1748448	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323430996	CHEV_10_102831702	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29347626					SNP	G	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103204929 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	within coordinates
Cpgi2165	CpG island 2165	103 bp distal
Gm66970	predicted gene, 66970	402 bp upstream
Rr385217	regulatory region 385217	within coordinates
Rr438423	regulatory region 438423	1215 bp distal
Rr438424	regulatory region 438424	605 bp distal
Rr438425	regulatory region 438425	104 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95604	transcription start site region 95604	1399 bp downstream
Tssr95605	transcription start site region 95605	1321 bp downstream
Tssr95606	transcription start site region 95606	1232 bp downstream
Tssr95607	transcription start site region 95607	259 bp upstream
Tssr95608	transcription start site region 95608	308 bp upstream
Tssr99159	transcription start site region 99159	within coordinates