rs29347860 SNP Detail

Summary

• ID
  rs29347860
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8761825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGGGTCC CCGCGCTGCC
  CACCGCTCGC AGCAGCGCGT CGGCCGACGG GGCGCAAGTT CCCCGCCCGC GGCGTCACCG
  GGCCGCGCCC CCGCGTCGCA TGCCCCAGGC TCCGCTGGGT ACGAGCACCA CTGCCAGGAC
  TGGCACCTCG ATCCCGGGCG ACCGCGATTG ACAACTCCAG AAACTTTTCC TAGCCCGGCC
  S
  CGCGCAGCAA CAGGGTAGCT GGAGCAGAGT CCACAACACT GGCTGCGGCG GGGAGTTCAC
  GGGACCAGGG AGACAAGAGC CACACCGCAC GGGTGCTGCG TCCTGCTTCG GGGACCGGCT
  CCGGGTGGCA CACCACTCGC CTCTACTGGA GAGTTTGTGC AGGGCTGGGC AGGGGACAGT
  GACGCCTGTG GACCCGGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38579627	mCV23688388	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss323245670	CHEV_10_8605879	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29347860					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8761825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1286	CpG island 1286			within coordinates
Gm26674	predicted gene, 26674			within coordinates
Rr427411	regulatory region 427411			1885 bp distal
Rr427412	regulatory region 427412			within coordinates
Sash1	SAM and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr92336	transcription start site region 92336			1983 bp downstream
Tssr96654	transcription start site region 96654			383 bp upstream
Tssr96655	transcription start site region 96655			196 bp upstream
Tssr96656	transcription start site region 96656			134 bp upstream
Tssr96657	transcription start site region 96657			51 bp upstream
Tssr96658	transcription start site region 96658			5 bp upstream
Tssr96659	transcription start site region 96659			11 bp downstream
Tssr96660	transcription start site region 96660			35 bp downstream
Tssr96661	transcription start site region 96661			120 bp downstream
Tssr96662	transcription start site region 96662			150 bp downstream
Tssr96663	transcription start site region 96663			444 bp downstream
Tssr96664	transcription start site region 96664			508 bp downstream