rs29347864 SNP Detail

Summary

• ID
  rs29347864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127920769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC CTCGAACTCA GAAATCTGCC
  Y
  GCCTCTGCCT CCCAAGTGCT GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38583415	mCV22823226	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147737919	ENSMUSSNP2106208	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29347864					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127920769 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	753 bp distal
Gm47438	predicted gene, 47438	1717 bp upstream
Gm55458	predicted gene, 55458	389 bp upstream
Mir677	microRNA 677	386 bp upstream
Rr402340	regulatory region 402340	1588 bp downstream
Rr441096	regulatory region 441096	1841 bp distal
Rr441097	regulatory region 441097	1617 bp distal
Rr441098	regulatory region 441098	1569 bp proximal
Rr441099	regulatory region 441099	1669 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	684 bp downstream
Tssr96319	transcription start site region 96319	1591 bp downstream
Tssr96320	transcription start site region 96320	962 bp downstream
Tssr96321	transcription start site region 96321	915 bp downstream
Tssr96322	transcription start site region 96322	610 bp upstream
Tssr96323	transcription start site region 96323	1131 bp upstream
Tssr96324	transcription start site region 96324	1232 bp upstream
Tssr96325	transcription start site region 96325	1392 bp upstream
Tssr96326	transcription start site region 96326	1409 bp upstream
Tssr96327	transcription start site region 96327	1425 bp upstream
Tssr96328	transcription start site region 96328	1472 bp upstream
Tssr99834	transcription start site region 99834	1919 bp upstream