rs29348416 SNP Detail

Summary

• ID
  rs29348416
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGACCTATT TGACTCAACT CTTTTGCATT TGTGACAAAG
  GGAAGGGACA GACTGGAAGA AATGGGAGGG GCAATGGAAA GTCTGAGACT GGGTGGAGTG
  W
  TGTGGATTTT CAGCCTCAAG CTTTGAACTT GTCCATAGAG GAAATGCATG CACATTTGCA
  TGTATTTGCC CTGGGAAGCA GTTCTTCTCA ATCAACCCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38585870	mCV23067245	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146822747	ENSMUSSNP3461273	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29348416					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430262 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1033 bp distal
Pex3	peroxisomal biogenesis factor 3	1376 bp upstream
Rr368928	regulatory region 368928	1207 bp downstream
Rr427802	regulatory region 427802	1691 bp distal
Rr427803	regulatory region 427803	1614 bp distal
Rr427804	regulatory region 427804	1409 bp distal
Rr427805	regulatory region 427805	886 bp distal
Rr427806	regulatory region 427806	within coordinates
Tssr92399	transcription start site region 92399	1279 bp downstream
Tssr92400	transcription start site region 92400	1260 bp downstream
Tssr96771	transcription start site region 96771	1648 bp upstream
Tssr96772	transcription start site region 96772	1457 bp upstream
Tssr96773	transcription start site region 96773	1433 bp upstream
Tssr96774	transcription start site region 96774	1392 bp upstream
Tssr96775	transcription start site region 96775	1365 bp upstream
Tssr96776	transcription start site region 96776	1352 bp upstream