rs29349366 SNP Detail

Summary

• ID
  rs29349366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:40759586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGGGA AATGTAGTTT
  GGAGCGAGGA GGTGGAGCCC GGCAGAGGGG GCCTGCCTTC GACCCCGCCC CCAAGAGGAT
  GCTTCATTCA ATTGGATGTC ATCTTCCCTC ATTCCCGAGC CCAGCACCGT TCTCTCCGGC
  CCCCTCCCCC AAAGTGCGGA TCGGGCAATA CCACAGAGCC TCAGGACAGG GGGAAGCGCC
  R
  TCCTCTTGCC CACGGACGGG TAAGTGGGTG GATGCTCATT CTCCCACCAT GCCGCCGTAC
  GCCCTGCAGG GTTCGAGGGG AGAGTGCGAA TCCTAAGTTC AGAGACCTGG GACCCGTCCG
  GTGCAGCTCC GGGGAAAGGT CGTGAGGCCA GGCGGAGAGC GCCCCGCGGC TCCCCCTGCT
  GCAGGCGCGG GTCCCCGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38586946	mCV23337240	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147070984	ENSMUSSNP4324587	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29349366					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40759586 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	447 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	51 bp downstream
Rr430264	regulatory region 430264	within coordinates
Rr430265	regulatory region 430265	166 bp proximal
Rr430266	regulatory region 430266	248 bp proximal
Rr430267	regulatory region 430267	1146 bp proximal
Tssr93031	transcription start site region 93031	107 bp downstream
Tssr93032	transcription start site region 93032	82 bp downstream
Tssr93033	transcription start site region 93033	within coordinates
Tssr93034	transcription start site region 93034	30 bp upstream
Tssr93035	transcription start site region 93035	229 bp upstream
Tssr97391	transcription start site region 97391	460 bp upstream
Wasf1	WASP family, member 1	mRNA-UTR