rs29349587 SNP Detail

Summary

• ID
  rs29349587
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67973874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCAAAC CTTCGCCTTC
  ACCACAGCCT TGGACCCCAT ATCAGTCACG AACCGAACCG TCAGTGTGCT AGGGGCGGTG
  ACCATAAAGA ACTGGTGACC GGAACCCCAT AATGCAACAG GAAACCTTCC TATTTCCTAA
  GACCCTCAGT GGAGCTTTGC GACTGGGGAT GGGGGTTGGG GGGGATAACA AATATTCCGC
  M
  CCTGAGTTAT ACCTACTTTC CTCCAGGGTA GAGAAACAAA TCGTTCTCTA TACCAATGAT
  TAAAAAGTGA ATGCTCCACG GTGGAGTAGT CTGGGTAAAG CAGGACTTTG AAGCTCATTC
  TCTCATAAGA GAAACATCCC TTCACCTTCC AGCCATCCTG AATACTCTAC TTATTCCCTC
  CTGGAAAGCA AGTGTCAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38587382	mCV24239185	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss147146185	ENSMUSSNP6069651	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss323351605	CHEV_10_67600792	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29349587					SNP	C	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67973874 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1351 bp distal
Rr384864	regulatory region 384864	within coordinates
Rr433197	regulatory region 433197	1429 bp distal
Rr433198	regulatory region 433198	1489 bp distal
Rr433199	regulatory region 433199	928 bp distal
Rr433200	regulatory region 433200	135 bp proximal
Rr433201	regulatory region 433201	1216 bp proximal
Tssr3230	transcription start site region 3230	1308 bp upstream
Tssr3231	transcription start site region 3231	1287 bp upstream
Tssr3232	transcription start site region 3232	1210 bp upstream
Tssr93877	transcription start site region 93877	1017 bp downstream
Tssr93878	transcription start site region 93878	248 bp downstream
Tssr97991	transcription start site region 97991	1432 bp upstream
Tssr97992	transcription start site region 97992	1420 bp upstream
Tssr97993	transcription start site region 97993	1406 bp upstream
Tssr97994	transcription start site region 97994	1367 bp upstream
Tssr97995	transcription start site region 97995	1348 bp upstream
Tssr97996	transcription start site region 97996	1336 bp upstream
Tssr97997	transcription start site region 97997	1322 bp upstream
Tssr97998	transcription start site region 97998	1262 bp upstream
Tssr97999	transcription start site region 97999	836 bp upstream
Tssr98000	transcription start site region 98000	670 bp upstream