rs29349914 SNP Detail

Summary

• ID
  rs29349914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40507562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAACCTA GGCTGATTCT
  GTTTTGGTAG CAATTGCCCG TAGAGAGACC TCGAAGTTCG CACTGTTATT TATGGAATGA
  GAGCTTAAAA GGTTGCTGGG CTGGGTCCTG GGGACCCTTT TTCGGAAGGA AGTTTTACTC
  TGAGAGGCTG CCTGATGTAA GGAAAGAACT TTAGGGTCAG ATTTCATCCG GGGAGAATAA
  Y
  GCCCTAAGCA AGGTGGTCCA TTTGCGTTTT CCTCCTTAGG CCATGGACAC AGTGTGTATT
  GCGGTCGTTG GAGCTGGCGT GATAGGGCTG TCTACTGCAG CATGCATTTC CCAACTGGTT
  CCCGGATGCA CCGTCACTGT CATCTCAGAC AGGTTCACTC CTGATACCAC CAGTAATGTA
  GCGGCTGGGA TGCTTATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38589261	mCV23537553	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss61273377	NES16894443	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	T	T	C	C
ss147067425	ENSMUSSNP3025640	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29349914					SNP	C	C	T	T	T	C	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273377	NES16894443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40507562 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	1962 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	1513 bp downstream
Tssr93027	transcription start site region 93027	1503 bp downstream