rs29350084 SNP Detail

Summary

• ID
  rs29350084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117937412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG AGGGGTGTTC GTTGTTAAAC
  R
  TTTGGCAAAT CACACAGAAG TATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38589303	mCV24220237	ABI	CRAMUS_MOUSE	f	SNP	A	G		G	G
ss52223848	NES15336075	PERLEGEN	MM_PANEL2	f	SNP		G	G		G	A		G	G	G	G		G
ss147594610	ENSMUSSNP5698113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
ss323501459	CHEV_10_117538563	CHEVERUD	SCREENING_POP	f	SNP							A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29350084					SNP	A	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52223848	NES15336075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117937412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	1691 bp proximal
Gm66186	predicted gene, 66186	1516 bp downstream
Gm66289	predicted gene, 66289	300 bp upstream
Rr369079	regulatory region 369079	1704 bp upstream
Rr402279	regulatory region 402279	518 bp downstream
Tssr3367	transcription start site region 3367	454 bp upstream
Tssr99497	transcription start site region 99497	1734 bp downstream