rs29351765 SNP Detail

Summary

• ID
  rs29351765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCACTGA AACACAAGCA
  CTGTGATACC ACGGCAATTG ATCTGAAGAG TGAGACAGCT ACTAGTGAGT TGTAGTGTAT
  ACAGTATATT TGTGCTGGCT TGTTTTATAT CAATTTAACA TAAGCTAGAG TCATAGGAGA
  GGAGGGAGTC TCAACTGAGA AAATGCCTCC ACAGGATACA GCTTTAGGCA AGCCTGTAGG
  R
  CATTTTCTTC ATTAGTGATC CATGCAGGAG GGCCTAGCCC ATCATGGGAG GGTCACTCCT
  GGCCTGGTGG TCCTGGGTGC TGTAAGAAAG CAGATTGAGC AAGCTAGTAA GCAGTCCTCC
  ATGGCCTCTG CATTAGCAGG TGACTCCAGG TTTCTGCCCC GCTTGAGTTC CTGCCTTGAC
  TTCCTCCAAT GTTGAATAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38589944	mCV25387044	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss146748284	ENSMUSSNP5290812	ENSEMBL	ENSEMBL_Sanger	r	SNP		T			C
ss323242354	CHEV_10_6607594	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29351765					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1269 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1417 bp upstream
Rr222570	regulatory region 222570	1608 bp distal
Rr224667	regulatory region 224667	853 bp proximal
Tssr92214	transcription start site region 92214	1306 bp upstream
Tssr92215	transcription start site region 92215	1401 bp upstream
Tssr92216	transcription start site region 92216	1506 bp upstream
Tssr92217	transcription start site region 92217	1697 bp upstream