rs29351807 SNP Detail

Summary

• ID
  rs29351807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8819820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTCTCTG GGGCATTAAG
  AGGGCACAGT CCCATGACAC AGATTCCAGT CAAATTCTGG CATTCAAATA AACCTTCCCT
  TTTTCAAGAG CCAAGGCAAC CAGTCGAGAG CAAGCAGTCT TTGGGCACTG AGATGAGAAC
  GCTACCTGCC AACTGGGTTG CTCTGGCCTA TTGTTTTTGA GACCAGGGAA ACATAAGGAA
  Y
  AGAGGAGGTT TGTGTTGCTG GGATGCCTTT GATGAACACA TCTGCACCAA GTTGAAAAAG
  GAAAATGGGC CAGGTCACTT TCCCCTCTCA GCTTTCCTTG GGGTTCCTGA ACATTCTCAC
  AGGGCAAGAC TTATACAACA GAATGGTTAT TTGGTCCAAA TCATAGCCAC AGCACCGCGT
  ACCTCCCCTA CCGTTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38592098	mCV23685945	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146768441	ENSMUSSNP5918449	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss323245912	CHEV_10_8663874	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29351807					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8819820 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	471 bp downstream
Rr427431	regulatory region 427431	896 bp proximal
Rr427432	regulatory region 427432	1779 bp proximal
Tssr96665	transcription start site region 96665	1159 bp downstream
Tssr96666	transcription start site region 96666	1205 bp downstream