rs29352356 SNP Detail

Summary

• ID
  rs29352356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTTCAT TGATACTCAA
  GTAACCTGTA TCAAATCTAG GGACAAGATA TTTATCTGGC ATCTAGATTC AATGCTCTTA
  CTGATTTTAA ATCACTAATT CCTTCACTCA TCCACAGAGC CTCGCTTTGT GGCTCTCAGA
  CTTGGCTGAA ACTCACTCAC TACCTACCCC ATGCAGGCCT CAGGCTCAAG CTAACCCTCC
  R
  ACTTCAGCCA CTGAAGCATC AGGATTTCAG ACACGAATCA TGGCACCGGG CTCACCTGAC
  ATCATTTCAT CTTTTCCCCC TAGCATTTTA ATGCTTAGTG ACGGGTAATC TAACAAAATT
  TCAATTTAAG ACTTATTGGC TGCCATGTTA ATACAATGAG TATTTAATCA AGTGGAGGAA
  GAAAACAGAC AGGCCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38597252	mCV25201843	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss146743546	ENSMUSSNP2918394	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		T
ss323240835	CHEV_10_6081197	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29352356					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215344 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1036 bp upstream
Cpgi1267	CpG island 1267	958 bp proximal
Cpgi1268	CpG island 1268	233 bp proximal
Gm67397	predicted gene, 67397	136 bp downstream
Gm67407	predicted gene, 67407	within coordinates
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	546 bp proximal
Rr426945	regulatory region 426945	1452 bp proximal
Tssr3113	transcription start site region 3113	773 bp upstream
Tssr3114	transcription start site region 3114	1186 bp upstream
Tssr92240	transcription start site region 92240	979 bp upstream
Tssr92241	transcription start site region 92241	1009 bp upstream