rs29352361 SNP Detail

Summary

• ID
  rs29352361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC CGTACCTCAC CCTCCCATTA
  Y
  ACACCACGGG GGATTTCTTC TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38597266	mCV23119834	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147378596	ENSMUSSNP1612272	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323407269	CHEV_10_93497562	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29352361					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	489 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1184 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	898 bp upstream
Rr437370	regulatory region 437370	within coordinates
Rr437371	regulatory region 437371	878 bp proximal
Rr437372	regulatory region 437372	1144 bp proximal
Rr437373	regulatory region 437373	1195 bp proximal
Tssr3327	transcription start site region 3327	1547 bp upstream
Tssr95293	transcription start site region 95293	632 bp upstream
Tssr95294	transcription start site region 95294	1227 bp upstream
Tssr95295	transcription start site region 95295	1240 bp upstream
Tssr98985	transcription start site region 98985	911 bp downstream
Tssr98986	transcription start site region 98986	954 bp downstream
Tssr98987	transcription start site region 98987	972 bp downstream
Tssr98988	transcription start site region 98988	1906 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates