rs29352684 SNP Detail

Summary

• ID
  rs29352684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8761887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCGCGG CGTCACCGGG
  CCGCGCCCCC GCGTCGCATG CCCCAGGCTC CGCTGGGTAC GAGCACCACT GCCAGGACTG
  GCACCTCGAT CCCGGGCGAC CGCGATTGAC AACTCCAGAA ACTTTTCCTA GCCCGGCCCC
  GCGCAGCAAC AGGGTAGCTG GAGCAGAGTC CACAACACTG GCTGCGGCGG GGAGTTCACG
  R
  GACCAGGGAG ACAAGAGCCA CACCGCACGG GTGCTGCGTC CTGCTTCGGG GACCGGCTCC
  GGGTGGCACA CCACTCGCCT CTACTGGAGA GTTTGTGCAG GGCTGGGCAG GGGACAGTGA
  CGCCTGTGGA CCCGGGCTAA TTAGTCCTGG ACCCCTCTCT TTAGAATGAG CTCTTCCAAC
  TCCACATGAC TCCCTCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38595069	mCV23688386	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss323245672	CHEV_10_8605941	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29352684					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8761887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	within coordinates
Gm26674	predicted gene, 26674	within coordinates
Rr427411	regulatory region 427411	1947 bp distal
Rr427412	regulatory region 427412	within coordinates
Sash1	SAM and SH3 domain containing 1	73 bp upstream
Tssr96654	transcription start site region 96654	445 bp upstream
Tssr96655	transcription start site region 96655	258 bp upstream
Tssr96656	transcription start site region 96656	196 bp upstream
Tssr96657	transcription start site region 96657	113 bp upstream
Tssr96658	transcription start site region 96658	67 bp upstream
Tssr96659	transcription start site region 96659	42 bp upstream
Tssr96660	transcription start site region 96660	18 bp upstream
Tssr96661	transcription start site region 96661	58 bp downstream
Tssr96662	transcription start site region 96662	88 bp downstream
Tssr96663	transcription start site region 96663	382 bp downstream
Tssr96664	transcription start site region 96664	446 bp downstream