rs29352903 SNP Detail

Summary

• ID
  rs29352903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86163764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA CATCACTTCC TGTGCATAGG
  Y
  AGAGTCAAAA GCTACGGGTC ACTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38597684	mCV24714903	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss47922453	NES12032819	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	T	C	T		T	C	T	C		T
ss147219075	ENSMUSSNP6527504	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss323373792	CHEV_10_85790645	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29352903					SNP	T	C	C	C	C	T	C	T	C	T	C	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922453	NES12032819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86163764 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	within coordinates
Rr217189	regulatory region 217189	1964 bp distal
Rr217190	regulatory region 217190	637 bp proximal
Rr220711	regulatory region 220711	1964 bp distal
Rr229228	regulatory region 229228	1038 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates